| Kingdom: | Animalia |
| Phylum: | Chordata |
| Subphylum: | Vertebrata |
| Class: | Mammalia |
| Order: | Chiroptera |
| Suborder: | Megachiroptera |
| Family: | Pteropodidae |
- Genus
- species – Common Name
- Acerodon
- celebensis, humilis, jubatus, lucifer, mackloti – ??
- Aethalops
- alecto – Pygmy fruit bat
- Alionycteris
- paucidentata – ??
- Aproteles
- bulmerae – ??
- Balionycteris
- maculata – Spotted-winged fruit bat
- Casinycteris
- argynnis – ??
- Chironax
- melanocephalus – Black-capped fruit bat
- Cynopterus
- archipelagus, brachyotis, horsfieldi, sphinx – Short-nosed fruit bat, Dog-faced fruit bat
- Dobsonia
- anderseni, beauforti, chapmani, crenulata, exolets, inermis, minor, moluccensis, pannietensis, peronii, praedatrix, remota, viridis – Bare-backed fruit bat
- Dyacopterus
- spadiceus – ??
- Eidolon
- helvum – Straw-coloured fruit bat
- Eonycteris
- longicauda, major, robusta, rosenbergi, spelaea – Dawn bat
- Epomophorus
- angolensis, crypturus, gambianus, lobiatus, pousarguesi, reii, wahlbergi – Epauleted fruit bat
- Epomops
- buettickoferi, dobsoni, franqueti – Epauleted bat
- Haplonycteris
- fischeri – ??
- Harpyionycteris
- celebensis, whiteheadi – Harpy fruit bat
- Hypsignathus
- monstrosus – Hammerheaded fruit bat
- Latidens
- salimalii – ??
- Macroglossus
- fructivorus, lagochilus, minimus, sobrinus – Long-tongued fruit bat
- Megaerops
- ecaudatus, kusnotoi, wetmorei – ??
- Megaloglossus
- woermanni – African long-tongued fruit bat
- Melonycteris
- aurantius, melanops, woodfordi – ??
- Micropteropus
- grandis, intermedius, pusillus – Dwarf epauleted bat
- Myonycteria
- brachycephala, relicta, torquata – Little collared fruit bat
- Nanonycteris
- veldkampi – Little flying cow
- Neopteryx
- frosti – ??
- Notopteris
- macdonaldi – Long-tailed fruit bat
- Nyctimene
- aello, albiventer, cephalotes, cyclotis, draconilla, major, malaitensis, minutus, robinsoni, sanctacrucius – Tube-nosed fruit bat
- Otopteropus
- cartilagonodus – ??
- Paranyctimene
- raptor – Lesser tube-nosed fruit bat
- Penthetor
- lucasii – Dusky fruit bat
- Plerotes
- anchietai – ??
- Ptenochirus
- jagori, minor – ??
- Pteralopex
- acrodonta, anceps, atrata – ??
- Pteropus
- admiralitatum, alecto, anetianus, argentatus, arquatus, auratus, balutus, caniceps, chrysoproctus, conspicillatus, dasymallus, fundatus, giganteus, gilliardi, griseus, howensis, hypomelanus, insularis, leucopterus, leucotis, lelei, livingstonei, lombocensis, macrotis, mahaganus, mariannus, mearnsi, melanopogon, melanotus, molossinus, neohibernicus, niger, nitendiensis, ocularis, ornatus, pelewensis, personatus, phaecocephalus, pilosus, pohlei, poliocephalus, pselaphon, pumilus, rayneri, rodricensis, rufus, samoensis, scapulatus, seychellensis, speciosus, subniger, tablasi, temmincki, tokudae, tonganus, tuberculatus, ualanus, vampyrus, vanikorensis, vetulus, voeltzkowi, woodfordi, yapensis – Flying fox
- Rousettus
- aegyptiacus, amplexicaudatus, angolensis, caelebensis, lanosus, leschenaulti, madagascariensis, obliviosus, spinalatus, seminudus – Rousette fruit bat
- Scotonycteris
- ophiodon, zenkeri – ??
- Sphaerias
- blandfordi – Mountain fruit bat
- Styloctenium
- wallacei – ??
- Synconycteris
- australis, crassa – Blossom bat
- Thoopterus
- nigrescens – Short-nosed fruit bat
