(1475-1519)
- Abiud and Eliakim – 1511-12 (Fresco)
- Angels Carrying the Instruments Used to Torture Christ – ???? (Fresco)
- Apostle Bartholomeus, The – ???? (Fresco)
- Ascent of the Just to Heaven – ???? (Fresco)
- Brazen serpent, The – 1511 (Fresco)
- Charon, the Ferryman of Death – ???? (Fresco)
- Congregation of the Waters, The – 1511 (Fresco)
- Conversion of Saul, The – 1542-45 (Fresco)
- Creation of Adam – 1509-10 (Fresco)
- Creation of Eve – c.1509 (Fresco)
- Creation of the Sun, Moon, and Plants, The – 1511 (Fresco)
- Crucifixion of Saint Peter – 1545-50 (Fresco)
- Cumaean Sybil, The – 1511 (Fresco)
- David and Goliath – 1509 (Fresco)
- Delphic Sibyl – 1508-09 (Fresco)
- Deluge, The – 1509 (Fresco)
- Descent to Hell of the Damned, The – ???? (Fresco)
- Despair of the Damned, The – ???? (Fresco)
- Doni Madonna, The – c.1503 (Tempera on wood panel)
- Epiphany – c.1550
- Erythraean Sibyl, The – 1509 (Fresco)
- Esther and Haman – 1511 (Fresco)
- Ezekiel – 1510 (Fresco)
- Fall and the Expulsion from Paradise, The – 1509-10 (Fresco)
- Flood, The – 1508-09 (Fresco)
- Holy Family – 1503-04 (Tempera)
- Jeremiah – c.1510 (Fresco)
- Judith and Holofernes – 1509 (Fresco)
- Last Judgment, The – 1537-41 (Fresco)
- Libyan Sibyl – 1511 (Fresco)
- Noah’s Drunkenness – 1509 (Fresco)
- Noah’s Sacrifice – 1509 (Fresco)
- Persian Sybil, The – 1511 (Fresco)
- Prophet Daniel, The – 1511 (Fresco)
- Prophet Isaiah, The – 1509 (Fresco)
- Prophet Jeremiah, The – 1511 (Fresco)
- Prophet Joel, The – 1509 (Fresco)
- Prophet Jonah, The – 1511 (Fresco)
- Prophet Zachariah, The – 1509 (Fresco)
- Resurrection of the Dead, The – ???? (Fresco)
- Sibyl of Delphi, The – 1509 (Fresco)
- Sibyl of Eritrea, The – 1509 (Fresco)
- Tondo Doni – 1542-45 (Fresco)